📄️ Cohort View
This cohort-level view displays structural variants as arches connecting chromosomal breakpoints using distinct colors to indicate duplications, deletions, inversions, and inter-chromosomal translocations. This view also displays copy number variants (CNV) and loss of heterozygosity (LOH).
📄️ Genome View
The genome view shows the selected sample in a circular visualization. This uses the visual representations that are similar to the ones on the cohort view but shows several additional tracks, such as chromosome ideograms and putative drivers.
📄️ Variant View
The variant view, focusing on a shorter genomic region, shows additional tracks on top of the tracks included in the genome view, including point mutations, indels, copy number variation like gains and loss of heterozgosity (LOH), and genes.
📄️ Breakpoint View
The breakpoint view shows reads around breakpoints and highlights pairs of reads with long distances, showing evidence for structural variant calls.
📄️ Navigation
All visualizations in Chromoscope are interactive which is designed to support easy-navigation between genomic regions of interest across scales.
📄️ Export
PNG
📄️ Data Sampling
For the efficient rendering of visualizations, entire data is not shown in the whole genome scale for point mutations, indels, and gene annotations.