Loading Data Through Interface

You can load a small number of samples directly on the browser through the interface. In the cohort-level view, there is a side panel that enables you to add a new sample by providing metadata (e.g., cancer type) and file URLs (e.g., bedpe, txt, vcf).

After providing all required information, you can click on the Add button on the bottom of this form. Once you click on it, you will be able to see a sample added as the first sample.

help

To test the browser for adding a sample, you can use the following information:

Fields	Contents
ID	7a921087-8e62-4a93-a757-fd8cdbe1eb8f
Cancer	Ovarian
assembly	"hg19"
SV	https://s3.amazonaws.com/gosling-lang.org/data/SV/7a921087-8e62-4a93-a757-fd8cdbe1eb8f.pcawg_consensus_1.6.161022.somatic.sv.bedpe
CNV	https://s3.amazonaws.com/gosling-lang.org/data/SV/7a921087-8e62-4a93-a757-fd8cdbe1eb8f.consensus.20170119.somatic.cna.annotated.txt

Details about each of the fields, as well as accepted files, are described in the following article.