Cohort View
This cohort-level view displays structural variants as arches connecting chromosomal breakpoints using distinct colors to indicate duplications, deletions, inversions, and inter-chromosomal translocations. This view also displays copy number variants (CNV) and loss of heterozygosity (LOH).
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| Figure. The visual summary of individual samples in the cohort view. |
With this cohort overview, you can quickly inspect the patterns of many structural variation samples and efficiently find samples of interest.
info
The four items listed on the bottom of each circular visualization (SV, Point Mutation, Indel, Read Alignment) denote whether the given sample contains the corresponding files.
Interactions
- You can click on a sample in this view to analyze them using three visualizations which are in the following sections.
- You can also browse PCAWG Data or load a small number of your datasets.
tip
You can find this view by clicking on a "≡" button shown on the top-left corner of the browser.